refact: move repository to data_repository

plesna/dataplatform.py

@@ -5,7 +5,7 @@ from plesna.graph.graph_set import GraphSet
 from plesna.models.flux import Flux, FluxMetaData
 from plesna.models.graphs import Node
 from plesna.models.libs.flux_graph import flux_to_edgeonset
-from plesna.storage.repository.repository import Repository
+from plesna.storage.data_repository.data_repository import DataRepository
 
 
 class DataPlateformError(Exception):
@@ -18,7 +18,7 @@ class DataPlateform:
         self._fluxes = {}
         self._repositories = {}
 
-    def add_repository(self, repository: Repository) -> str:
+    def add_repository(self, repository: DataRepository) -> str:
         if repository.id in self._repositories:
             raise DataPlateformError("The repository {repository.id} already exists")
 
@@ -29,7 +29,7 @@ class DataPlateform:
     def repositories(self) -> list[str]:
         return list(self._repositories)
 
-    def repository(self, id: str) -> Repository:
+    def repository(self, id: str) -> DataRepository:
         return self._repositories[id]
 
     def add_flux(self, name: str, flux: Flux) -> str:

plesna/storage/data_repository/data_repository.py

@@ -3,7 +3,7 @@ import abc
 from plesna.models.storage import Partition, Schema, Table
 
 
-class Repository:
+class DataRepository:
     def __init__(self, id: str, name: str):
         self._id = id
         self._name = name

plesna/storage/data_repository/fs_data_repository.py

@@ -3,8 +3,8 @@ from pathlib import Path
 from pydantic import BaseModel, computed_field
 
 from plesna.libs.string_tools import extract_values_from_pattern
-from plesna.models.storage import Partition, Schema, Table
-from plesna.storage.repository.repository import Repository
+from plesna.models.storage import Schema, Table
+from plesna.storage.data_repository.data_repository import DataRepository
 
 
 class FSTable(BaseModel):
@@ -58,8 +58,8 @@ class FSRepositoryError(ValueError):
     pass
 
 
-class FSRepository(Repository):
-    """Repository based on files tree structure
+class FSDataRepository(DataRepository):
+    """Data Repository based on files tree structure
 
     - first level: schemas
     - second level: tables

tests/dataplatform/test_dataplateform.py

@@ -6,13 +6,13 @@ import pytest
 from plesna.dataplatform import DataPlateform
 from plesna.models.graphs import Edge, EdgeOnSet, Node
 from plesna.models.flux import Flux, Transformation
-from plesna.storage.repository.fs_repository import FSRepository
+from plesna.storage.data_repository.fs_data_repository import FSDataRepository
 
 FIXTURE_DIR = Path(__file__).parent.parent / Path("raw_datas")
 
 
 @pytest.fixture
-def repository(tmp_path) -> FSRepository:
+def repository(tmp_path) -> FSDataRepository:
     example_src = FIXTURE_DIR
     assert example_src.exists()
 
@@ -24,11 +24,11 @@ def repository(tmp_path) -> FSRepository:
     silver_path = Path(tmp_path) / "silver"
     silver_path.mkdir()
 
-    return FSRepository("test", "test", tmp_path)
+    return FSDataRepository("test", "test", tmp_path)
 
 
 def test_add_repository(
-    repository: FSRepository,
+    repository: FSDataRepository,
 ):
     dp = DataPlateform()
     dp.add_repository(repository)
@@ -39,7 +39,7 @@ def test_add_repository(
 
 
 @pytest.fixture
-def copy_flux(repository: FSRepository) -> Flux:
+def copy_flux(repository: FSDataRepository) -> Flux:
     raw_username = [repository.table("test-raw-username")]
     bronze_username = [repository.table("test-bronze-username")]
 
@@ -62,7 +62,7 @@ def copy_flux(repository: FSRepository) -> Flux:
 
 
 @pytest.fixture
-def foo_flux(repository: FSRepository) -> Flux:
+def foo_flux(repository: FSDataRepository) -> Flux:
     src = [
         repository.table("test-raw-username"),
         repository.table("test-raw-recovery"),
@@ -84,7 +84,7 @@ def foo_flux(repository: FSRepository) -> Flux:
     return flux
 
 
-def test_add_flux(repository: FSRepository, copy_flux: Flux):
+def test_add_flux(repository: FSDataRepository, copy_flux: Flux):
     dataplatform = DataPlateform()
     dataplatform.add_repository(repository)
 
@@ -99,7 +99,7 @@ def test_add_flux(repository: FSRepository, copy_flux: Flux):
 
 @pytest.fixture
 def dataplatform(
-    repository: FSRepository,
+    repository: FSDataRepository,
     foo_flux: Flux,
     copy_flux: Flux,
 ) -> DataPlateform:

tests/storage/test_fs_data_repository.py

@@ -3,7 +3,7 @@ from pathlib import Path
 
 import pytest
 
-from plesna.storage.repository.fs_repository import FSRepository
+from plesna.storage.data_repository.fs_data_repository import FSDataRepository
 
 FIXTURE_DIR = Path(__file__).parent.parent / Path("./raw_datas/")
 
@@ -20,7 +20,7 @@ def location(tmp_path):
 
 
 def test_init(location):
-    repo = FSRepository("example", "example", location)
+    repo = FSDataRepository("example", "example", location)
     assert repo.ls() == [
         "schema",
     ]
@@ -44,8 +44,8 @@ def test_init(location):
 
 
 @pytest.fixture
-def repository(location) -> FSRepository:
-    return FSRepository("repo_id", "example", location)
+def repository(location) -> FSDataRepository:
+    return FSDataRepository("repo_id", "example", location)
 
 
 def test_list_schemas(repository):