Feat: test on pandas xlsx and ods file reader

dashboard/libs/repository/fs_repository.py

@@ -4,6 +4,10 @@ import pandas as pd
 
 from .repository import AbstractRepository
 
+ACCEPTABLE_EXTENTIONS = {
+    "csv": [".csv"],
+    "excel": [".xls", ".xlsx"],
+}
 
 class FSRepository(AbstractRepository):
     def __init__(self, name, basepath, metadata_engine=None):
@@ -20,18 +24,30 @@ class FSRepository(AbstractRepository):
 
         if only_files:
             return [
-                str(f.relative_to(dirpath)) for f in dirpath.iterdir() if not f.is_dir()
+                str(f.relative_to(dirpath))
+                for f in dirpath.iterdir()
+                if not f.is_dir() and not str(f).startswith(".")
             ]
 
         if only_directories:
             if recursive:
-                return [str(f[0].relative_to(dirpath)) for f in dirpath.walk()]
-
                 return [
-                str(f.relative_to(dirpath)) for f in dirpath.iterdir() if f.is_dir()
+                    str(f[0].relative_to(dirpath))
+                    for f in dirpath.walk()
+                    if not str(f).startswith(".")
                 ]
 
-        return [str(f.relative_to(dirpath)) for f in dirpath.iterdir()]
+            return [
+                str(f.relative_to(dirpath))
+                for f in dirpath.iterdir()
+                if f.is_dir() and not str(f).startswith(".")
+            ]
+
+        return [
+            str(f.relative_to(dirpath))
+            for f in dirpath.iterdir()
+            if not str(f).startswith(".")
+        ]
 
     def schemas(self, recursive=True) -> list[str]:
         return self.ls("", only_directories=True, recursive=True)
@@ -49,16 +65,17 @@ class FSRepository(AbstractRepository):
         table_path = self.build_table_path(table, schema)
         pass
 
-    def read(self, table: str, schema: str = ".", read_options={}):
+    def read(self, table: str, schema: str = ".", **read_options):
         table_path = self.build_table_path(table, schema)
+        assert table_path.exists()
         extension = table_path.suffix
-        if extension == ".csv":
+        if extension in ACCEPTABLE_EXTENTIONS["csv"]:
             return pd.read_csv(table_path, **read_options)
 
-        if extension == ".xlsx":
+        if extension in ACCEPTABLE_EXTENTIONS["excel"]:
-            return pd.read_excel(table_path, **read_options)
+            return pd.read_excel(table_path, engine = "openpyxl", **read_options)
 
-        raise ValueError("Can't open the table")
+        raise ValueError("Bad extention. Can't open the table.")
 
     def write(self, content, table: str, schema: str = "."):
         table_path = self.build_table_path(table, schema)

requirements.txt

@@ -1,7 +1,6 @@
 jupyter==1.0.0 
-pandas==1.5.0
+pandas==2.2.2
-pdf-oralia==0.3.11
+pydantic==2.8.2
-pydantic==2.6.1
 click==8.1.7
-dlt[duckdb]>=0.4.3a0
+openpyxl==3.1.5
-openpyxl>=3.0.0
+xlrd==2.0.1

tests/repository/fs_examples/username.csv

@@ -1,4 +1,4 @@
-Username; Identifier;First name;Last name
+Username;Identifier;First name;Last name
 booker12;9012;Rachel;Booker
 grey07;2070;Laura;Grey
 johnson81;4081;Craig;Johnson

tests/repository/test_fs_repository.py

@@ -2,6 +2,7 @@ import shutil
 from pathlib import Path
 
 import pytest
+from pandas import pandas
 
 from dashboard.libs.repository.fs_repository import FSRepository
 
@@ -42,5 +43,42 @@ def test_init(location):
     assert repo.tables("username") == [
         "username.csv",
         "username-password-recovery-code.xlsx",
+        "username-password-recovery-code.xls",
     ]
     assert repo.tables("salary") == ["salary.pdf"]
+
+
+def test_read_csv(location):
+    repo = FSRepository("example", location)
+    username = repo.read("username.csv", "username", delimiter=";")
+    assert list(username.columns) == [
+        "Username",
+        "Identifier",
+        "First name",
+        "Last name",
+    ]
+    assert len(username.index) == 5
+
+
+def test_fake_read_xlsx(location):
+    repo = FSRepository("example", location)
+    df = pandas.read_excel(
+        location / "username" / "username-password-recovery-code.xls"
+    )
+    print(df)
+
+
+def test_read_xlsx(location):
+    repo = FSRepository("example", location)
+    username = repo.read("username-password-recovery-code.xls", "username")
+    assert list(username.columns) == [
+        "Username",
+        "Identifier",
+        "One-time password",
+        "Recovery code",
+        "First name",
+        "Last name",
+        "Department",
+        "Location",
+    ]
+    assert len(username.index) == 5